A GRID-based multilayer architecture for bioinformatics

نویسندگان

  • Ezio Bartocci
  • Diletta Cacciagrano
  • Nicola Cannata
  • Flavio Corradini
  • Emanuela Merelli
  • Luciano Milanesi
  • Paolo Romano
چکیده

The volume and complexity of biological data and informations available today need a significant computational data and processes analysis. A huge amount of bioinformatics databases and tools is available. Some of them allow bioinformaticians to intuitively compose their in-silico experiments in the form of workflows. Other applications aim at the analysis, modeling and simulation of biological systems and processes. In this context, the quest for resources becomes a very demanding and time-consuming activity, so that a dynamic semantic indexing system of bioinformatics resources becomes essential. As a consequence, the availability of a virtual desk fulfilling bioinformaticians needs, undoubtedly constitutes an important requirement in modern and future biology. For this purpose, we propose a GRID-based multilayer architecture, intended to support in-silico experiments, resource discovery and biological systems simulation.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

MUST-CNN: A Multilayer Shift-and-Stitch Deep Convolutional Architecture for Sequence-Based Protein Structure Prediction

Predicting protein properties such as solvent accessibility and secondary structure from its primary amino acid sequence is an important task in bioinformatics. Recently, a few deep learning models have surpassed the traditional window based multilayer perceptron. Taking inspiration from the image classification domain we propose a deep convolutional neural network architecture, MUST-CNN, to pr...

متن کامل

Grendel: A bioinformatics Web Service-based architecture for accessing HPC resources

Bioinformatics is an important application area for grid computing. Bioinformatics applications exported over a grid have the potential to facilitate transparent access to high performance computing (HPC) resources to a range of stakeholders. These stakeholders include application users, application developers, system administrators as well as service providers. In this paper we describe a Web ...

متن کامل

Proteus, a Grid based Problem Solving Environment for Bioinformatics: Architecture and Experiments

Bioinformatics can be considered as a bridge between life science and computer science. Biology requires high and large computing power to performance biological applications and to access huge number of distributed and (often) heterogeneous databases. Computer scientists and database communities have expertises in high performance algorithms computation and in data management. Considering bioi...

متن کامل

Architectural Plan for Constructing Fault Tolerable Workflow Engines Based on Grid Service

In this paper the design and implementation of fault tolerable architecture for scientific workflow engines is presented. The engines are assumed to be implemented as composite web services. Current architectures for workflow engines do not make any considerations for substituting faulty web services with correct ones at run time. The difficulty is to rollback the execution state of the workflo...

متن کامل

Architectural Plan for Constructing Fault Tolerable Workflow Engines Based on Grid Service

In this paper the design and implementation of fault tolerable architecture for scientific workflow engines is presented. The engines are assumed to be implemented as composite web services. Current architectures for workflow engines do not make any considerations for substituting faulty web services with correct ones at run time. The difficulty is to rollback the execution state of the workflo...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2006